PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 426aa    MW: 47350.1 Da    PI: 4.7631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916315genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.13.2e-29531552103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.......TEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.......gFkkvkdeekkskskekiweFkhksFkkgkk 91 
                   Fl+k+y++++d++++ +isw ++g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+Y        F+  ++ +      ++ we++++ F k++k
     462916315  53 FLTKVYDMVSDPATDAVISWGASGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYvrflgplCFHGFRKVD------QDRWEWANEGFVKDQK 143
                   9**********************************************************6555444244444444......447************* PP

                   XXXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkkse 103
                   +ll++ikrkk++
     462916315 144 HLLKTIKRKKKT 155
                   *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-4749152IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3149152IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3350152IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-125376IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-2853152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-1291103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-12104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGSKKRTPQP AAVVAGSPAA GEVPGDVGAP PAGKGPAPAP VGVVPKPPDV APFLTKVYDM  60
VSDPATDAVI SWGASGGSFV IWDSHAFERD LLPRHFKHNH FTSFIRQLNT YVRFLGPLCF  120
HGFRKVDQDR WEWANEGFVK DQKHLLKTIK RKKKTSQETP DPPQAPVKTP PGTENIEIGN  180
YGGLEKEVET LKRDKTLLMQ QLVDLRQYQQ SSSLELQNLI QRLHVMEKNQ QQMMALLAIV  240
VSNPDFLTQL VQQQHRSSWC YDDGSKKRRF HALEQGPVAE QETSGAGAQI IQYLPSVAEI  300
SNQVMPVNGC SNLSQTVSSP ALAMPMNTEP TSDNADTLGS TRNNIFTDSS AQHEVDDMLL  360
FVDDLESMLQ LDDQDCQVEE QQDNQMEAQQ NCEVEPPLTI EDYPNFELDC QMGAQQNCQN  420
PQYGIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-22341529129Heat shock factor protein 1
5d5v_B5e-22341529129Heat shock factor protein 1
5d5v_D5e-22341529129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130542.10.0uncharacterized protein LOC100191641
SwissprotQ10PR41e-163HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLB4F9K60.0B4F9K6_MAIZE; Uncharacterized protein
STRINGSb01g042370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.28e-61heat shock factor 3